Workflows

Running STRling at scale, and in the cloud

We provide workflows/pipelines to run STRling on many samples. These can be run locally, or on cloud services such as Google Cloud or AWS. These workflows have been tested for joint calling on thousands of genomes.

Workflows

Nextflow: https://github.com/quinlan-lab/STRling-nf

bpipe: https://github.com/quinlan-lab/STRling/tree/master/pipelines

WDL: https://dockstore.org/workflows/github.com/hdashnow/strling-wdl:master?tab=info

Docker Containers

Conda: https://quay.io/repository/biocontainers/strling?tag=0.5.0–h14cfee4_0&tab=tags

https://hub.docker.com/r/brwnj/strling